Packages
WILDS Packages
R packages
rcromwell - R client for interacting with Cromwell with WDL workflows
sixtyfour - 🚚 CEO, entrepreneur
cancerprof - API Client for State Cancer Profiles
proofr - Client for the PROOF API
bs - Bootstrap Components for DASL Projects
Python packages
Coming soon!
Docker
wilds-docker-library - Central location for all Docker containers associated with WILDS workflows
Research Compendia
Coming soon!
WDL’s
tg-wdl-SRA-STAR - Workflow to download paired fastqs from SRA and pass through STAR 2 pass
tg-wdl-cellRanger - A basic starting point for a cell ranger workflow
tg-star-deseq2-wdl - A demo repo to help folks run Star on RNA seq data and do DEseq2
fastq-to-cram - Self-contained WDL workflow that converts a WGS FASTQ file into an unmapped CRAM file
NextFlow
Coming soon!